Xenopus Genome Project Consortium

Core members

University of California, Berkeley & Joint Genome Institute (JGI)

Role: Genome sequencing & assembly, gene annotation and other computational analyses

• Richard M. Harland
• Daniel S. Rokhsar
• Adam Session
• Jarrod Chapman

University of Tokyo, Japan

Role: Large-scale J-strain RNA-seq, BAC sequencing, FISH, validation of gene annotation

• Masanori Taira
• Shuji Takahashi
• Mariko Kondo

University of Texas, Austin

Role: Gene annotation, RNA-seq/ChIP-seq analyses, shotgun proteomics analyses, and other computational analyses.

• Edward M. Marcotte
• John B. Wallingford
• Taejoon Kwon

Data contributors

X. laevis RNA-seq data

• Amin201106 - Nirav Amin, Panna Tandon, Frank Conlon (University of North Carolina, Chapel Hill)
• Audic201207 - Yann Audic (Université de RENNES I, France)
• Blower201306 - Mike Blower (Harvard Medical School)
• Chang201302 - Chenbei Chang (University of Alabama at Birmingham)
• Chung201110 - Mei-I Chung, John Wallingford (University of Texas at Austin)
• Horb201201 - Marko Horb (Marine Biological Laboratory)
• Ismailoglu201203 - Ismil Ismailoglu, Ali Brivanlov (Rockefeller University)
• Kwon201107 - Taejoon Kwon, Mei-I Chung, John Wallingford, Edward Marcotte (University of Texas at Austin)
• Kwon201206 - Taejoon Kwon, Marta Teperek, Jerome Jullien, John Gurdon, Edward Marcotte (University of Texas at Austin; Gurdon Institute, UK)
• Quigley201112, Quigley201207, Quigley201212, Quigley201307 - Ian Quigley, Christopher Kintner (Salk Institute)
• Taira201203 - Masanori Taira, Shuji Takahashi (University of Tokyo, Japan)
• TeperekTkacz201202, TeperekTkacz201205, TeperekTkacs201206 - Marta Teperek, Jerome Jullien, John Gurdon(Gurdon Institute, UK)
• Ueno201210 - Naoto Ueno, Shuji Takahashi, Masanori Taira (University of Tokyo, Japan; National Institute for Basic Biology, Japan)
• Veenstra201204 - Gert Veenstra (Radboud University Nijmegen, The Netherlands)

Other Xenopus RNA-seq data

• Evans201309 - X. paratropicalis Ben Evans (McMaster Univeristy, Canada)
• Gall201301 - X. tropicalis Joseph Gall (Carnegie Institution for Science)
• Tan201204 - X. tropicalis Meng How Tan, Billy Li (Stanford Univeristy)

X. laevis ChIP-seq data

• Chung201208 - Mei-I Chung, Rakhi Gupta, Julie Baker, John Wallingford (University of Texas at Austin; Stanford University)
• Gupta201202 - Rakhi Gupta, Julie Baker (Stanford University)
• Quigley201306 - Ian Quigley, Christopher Kintner (Salk Institute)
• TeperekTkacz201306 - Marta Teperek, Jerome Jullien, John Gurdon(Gurdon Institute, UK)

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