Difference between revisions of "CH391L/UTpond"
From Marcotte Lab
< CH391L
(Created page with "== Number of reads == * V3BC21: 213,419 (F3), 199,158 (F5), 223,100 (raw) * V3BC22: 634,431 (F3), 595,251 (F5), 661,120 (raw) * V3BC23: 1,015,471 (F3), 951,357 (F5), 1,06...") |
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* Eukaryotes: | * Eukaryotes: | ||
* Viruses: | * Viruses: | ||
+ | |||
+ | |||
+ | == Analysis tool == | ||
+ | * SAM : alignment report format | ||
+ | ** [http://samtools.sourceforge.net/SAM-1.3.pdf Specification PDF] | ||
+ | ** [http://bioinformatics.oxfordjournals.org/content/25/16/2078.long Paper] | ||
+ | * SHRiMP: Alignment tool http://compbio.cs.toronto.edu/shrimp/ | ||
+ | ** [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000386 Paper for original version) | ||
+ | ** [http://bioinformatics.oxfordjournals.org/content/early/2011/01/28/bioinformatics.btr046 Paper for version 2] | ||
---- | ---- | ||
[[Category:CH391L]] | [[Category:CH391L]] |
Revision as of 09:39, 25 March 2011
Number of reads
- V3BC21: 213,419 (F3), 199,158 (F5), 223,100 (raw)
- V3BC22: 634,431 (F3), 595,251 (F5), 661,120 (raw)
- V3BC23: 1,015,471 (F3), 951,357 (F5), 1,060,308 (raw)
- V3BC24: 562,803 (F3), 525,892 (F5), 588,304 (raw)
- V3BC25: 569,125 (F3), 531,015 (F5), 595,064 (raw)
Databases
- Prokaryotes:
- Eukaryotes:
- Viruses:
Analysis tool
- SAM : alignment report format
- SHRiMP: Alignment tool http://compbio.cs.toronto.edu/shrimp/
- [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000386 Paper for original version)
- Paper for version 2