Difference between revisions of "XENLA Genome"
From Marcotte Lab
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= Genome version = | = Genome version = | ||
{| class="wikitable" style="text-align: center" | {| class="wikitable" style="text-align: center" | ||
+ | !Name | ||
+ | !Release Date | ||
+ | !Concat. Length (bp) | ||
+ | !N50 (bp) | ||
+ | !Scaffolds > 10kbp | ||
+ | |- | ||
|JGIv1 | |JGIv1 | ||
|2009 | |2009 | ||
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|JGIv6a | |JGIv6a | ||
|2010 oct | |2010 oct | ||
+ | |- | ||
|JGIv7a | |JGIv7a | ||
|2012 Mar. | |2012 Mar. |
Revision as of 13:38, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp |
---|---|---|---|---|
JGIv1 | 2009 | |||
JGIv5 | 2009 Oct. | |||
JGIv6 | 2010 | |||
JGIv6a | 2010 oct | |||
JGIv7a | 2012 Mar. | |||
JGIv7b | 2012 May | |||
NIGv1 | 2011 Nov | |||
NIGv1ap | 2011 Nov | |||
NIGv1m | 2011 Nov. | |||
NIGv2 | 2012 | |||
NIGv2c | 2012 |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair