Difference between revisions of "XENLA Genome"
From Marcotte Lab
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|JGIv6a | |JGIv6a | ||
|2010 oct | |2010 oct | ||
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|- | |- | ||
|NIGv1 | |NIGv1 | ||
− | | | + | |2012 Nov |
|- | |- | ||
|NIGv1ap | |NIGv1ap | ||
− | | | + | |2012 Nov |
|- | |- | ||
|NIGv1m | |NIGv1m | ||
− | | | + | |2012 Nov. |
|- | |- | ||
|NIGv2 | |NIGv2 | ||
− | | | + | |2013 Feb. |
|- | |- | ||
|NIGv2c | |NIGv2c | ||
− | | | + | |2013 Feb. |
+ | |- | ||
+ | |JGIv7a | ||
+ | |2013 Mar. | ||
+ | |- | ||
+ | |JGIv7b | ||
+ | |2013 May | ||
|} | |} | ||
Revision as of 13:42, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp | Remarks |
---|---|---|---|---|---|
JGIv1 | 2009 | ||||
JGIv5 | 2009 Oct. | ||||
JGIv6 | 2010 | ||||
JGIv6a | 2010 oct | ||||
NIGv1 | 2012 Nov | ||||
NIGv1ap | 2012 Nov | ||||
NIGv1m | 2012 Nov. | ||||
NIGv2 | 2013 Feb. | ||||
NIGv2c | 2013 Feb. | ||||
JGIv7a | 2013 Mar. | ||||
JGIv7b | 2013 May |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair