Difference between revisions of "XENLA Genome"
From Marcotte Lab
(→Genome version) |
(→Genome version) |
||
Line 45: | Line 45: | ||
|JGIv7a | |JGIv7a | ||
|2013 Mar. | |2013 Mar. | ||
+ | |2.72 Gbp | ||
+ | |1.15 Mbp | ||
+ | |5,714 | ||
|- | |- | ||
|JGIv7b | |JGIv7b | ||
|2013 May | |2013 May | ||
+ | |2.78 Gbp | ||
+ | |3.49 Mbp | ||
+ | |2,598 | ||
|} | |} | ||
Revision as of 13:45, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp | Remarks |
---|---|---|---|---|---|
JGIv1 | 2009 | ||||
JGIv5 | 2009 Oct. | ||||
JGIv6 | 2010 | ||||
JGIv6a | 2010 oct | ||||
NIGv1 | 2012 Nov | ||||
NIGv1ap | 2012 Nov | ||||
NIGv1m | 2012 Nov. | ||||
NIGv2 | 2013 Feb. | ||||
NIGv2c | 2013 Feb. | ||||
JGIv7a | 2013 Mar. | 2.72 Gbp | 1.15 Mbp | 5,714 | |
JGIv7b | 2013 May | 2.78 Gbp | 3.49 Mbp | 2,598 |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair