Difference between revisions of "XENLA Genome"
From Marcotte Lab
(→Genome version) |
(→Genome version) |
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Line 33: | Line 33: | ||
|0.34 Mbp | |0.34 Mbp | ||
|14,260 | |14,260 | ||
− | |Original name is 'xl.v1soap'; Internal Use Only. | + | |Original name is 'xl.v1soap';<br/>Internal Use Only. |
|- | |- | ||
|NIGv1ap | |NIGv1ap | ||
Line 40: | Line 40: | ||
|0.17 Mbp | |0.17 Mbp | ||
|39,283 | |39,283 | ||
− | |Original name is 'xl.v3ap'(AllPath?); Internal Use Only. | + | |Original name is 'xl.v3ap'(AllPath?);<br/>Internal Use Only. |
|- | |- | ||
|NIGv1m | |NIGv1m | ||
Line 47: | Line 47: | ||
|0.28 Mbp | |0.28 Mbp | ||
|82,132 | |82,132 | ||
− | |Original name is 'xl.v5m'; Internal Use Only. | + | |Original name is 'xl.v5m'; <br/>Internal Use Only. |
|- | |- | ||
|NIGv2 | |NIGv2 |
Revision as of 14:06, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp | Remarks |
---|---|---|---|---|---|
JGIv1 | 2009 | ||||
JGIv5 | 2009 Oct. | ||||
JGIv6 | 2010 | ||||
JGIv6a | 2010 oct | ||||
NIGv1 | 2012 Nov | 2.88 Gbp | 0.34 Mbp | 14,260 | Original name is 'xl.v1soap'; Internal Use Only. |
NIGv1ap | 2012 Nov | 3.27 Gbp | 0.17 Mbp | 39,283 | Original name is 'xl.v3ap'(AllPath?); Internal Use Only. |
NIGv1m | 2012 Nov. | 2.84 Gbp | 0.28 Mbp | 82,132 | Original name is 'xl.v5m'; Internal Use Only. |
NIGv2 | 2013 Feb. | ||||
NIGv2c | 2013 Feb. | ||||
JGIv7a | 2013 Mar. | 2.72 Gbp | 1.15 Mbp | 5,714 | JGI7;Internal Use Only |
JGIv7b | 2013 May | 2.78 Gbp | 3.49 Mbp | 2,598 | JGI7.2;Internal Use Only |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair