Difference between revisions of "XENLA Genome"
From Marcotte Lab
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(→Genome version) |
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|JGIv1 | |JGIv1 | ||
− | | | + | |2011 Dec. |
+ | |2.30 Gbp | ||
+ | |8 kbp | ||
+ | |385,933 | ||
+ | |Internal Use Only | ||
|- | |- | ||
|JGIv5 | |JGIv5 | ||
− | | | + | |2011 Oct. |
+ | | | ||
+ | | | ||
+ | | | ||
+ | |Released in Xenopus PI Meeting | ||
|- | |- | ||
|JGIv6 | |JGIv6 | ||
|2010 | |2010 | ||
+ | | | ||
+ | | | ||
+ | | | ||
+ | |Officially released in XenBase | ||
|- | |- | ||
|JGIv6a | |JGIv6a | ||
|2010 oct | |2010 oct | ||
+ | | | ||
+ | | | ||
+ | | | ||
+ | |Officially released in XenBase | ||
|- | |- | ||
|NIGv1 | |NIGv1 |
Revision as of 14:09, 8 May 2013
Genome browser
- XenBase - JGIv6
- NIMR, UK (Mike Gilchrist) - JGIv5(2011oct), JGIv6a(2012nov)
- NIG, Japan (Asao Fujiyama & Masanori Taira) - NIGv2
Genome version
Name | Release Date | Concat. Length (bp) | N50 (bp) | Scaffolds > 10kbp | Remarks |
---|---|---|---|---|---|
JGIv1 | 2011 Dec. | 2.30 Gbp | 8 kbp | 385,933 | Internal Use Only |
JGIv5 | 2011 Oct. | Released in Xenopus PI Meeting | |||
JGIv6 | 2010 | Officially released in XenBase | |||
JGIv6a | 2010 oct | Officially released in XenBase | |||
NIGv1 | 2012 Nov | 2.88 Gbp | 0.34 Mbp | 14,260 | Original name is 'xl.v1soap'; Internal Use Only. |
NIGv1ap | 2012 Nov | 3.27 Gbp | 0.17 Mbp | 39,283 | Original name is 'xl.v3ap'(AllPath?); Internal Use Only. |
NIGv1m | 2012 Nov. | 2.84 Gbp | 0.28 Mbp | 82,132 | Original name is 'xl.v5m'; Internal Use Only. |
NIGv2 | 2013 Feb. | ||||
NIGv2c | 2013 Feb. | ||||
JGIv7a | 2013 Mar. | 2.72 Gbp | 1.15 Mbp | 5,714 | JGI7;Internal Use Only |
JGIv7b | 2013 May | 2.78 Gbp | 3.49 Mbp | 2,598 | JGI7.2;Internal Use Only |
Data Summary
Whole genome shotgun sequencing, JGI/UC Berkeley, USA
- Illumina mate-pair
Whole genome shotgun sequencing, NIG/U Tokyo, Japan
- Illumina mate-pair
Whole genome shotgun sequencing, UT Austin, USA
- SOLiD mate-pair