XENLA Oktoberfest
From Marcotte Lab
This is a page for integrated gene models of Xenopus laevis, released in October, 2012. "Oktoberfest" is a name of dataset.
Contents |
Input data
- JGIv6 scaffold
- Reference cDNA/EST
- From XenBase
- Mike Gilchrist's EST collection (mgEST*)
- John Quakenbush's EST collection (TC*)
- JGI's cDNA collection (XeXen*)
- Assembled transcripts
Analysis procedures
Known issues
- Orientation of the cDNA/EST mapping figure may be incorrect. Translation to protein coding is only checked for representative sequences (2-3 sequences per genomic region), so some transcripts that still support gene structure may be oriented in opposite direction. It will be fixed in next release.
- Some genomic regions do not have tree figures, because of newick utilities error. It will be fixed in next release.
Plan
- Next release is planned near Thanksgiving, 2012.